Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015815476.1_cds_XP_016498342.1_12377
CDS Infomation

[gene=LOC107817079] [db_xref=GeneID:107817079] [protein=regulator of nonsense transcripts UPF3-like] [protein_id=XP_016498342.1] [location=join(24804..24943,27348..27454,27708..27803,27890..27988,28136..28215,29426..29539,29877..30021,37288..37355,38162..38603,38901..38999,39131..39228,39334..39372)] [gbkey=CDS]
Sequence

ATGAAGGGACCGTTAGATCGAACAAAAGTAGTGCTGCGGCACTTGCCCCCTACAATTTCT
CAGTCTATGCTTGTTGAGCAAGTTCTTTCCCGATTCACTGGTCGCTACAACTGGTTCTCT
TTTCGTCCTGGCAAGTCCAGCCAGAAGCATCAAACCTATTCAAGAGCATATGTTGACTTT
AAGAGGCCAGAAGATGTTATCGAGTTTGCCGAGTTCTTTGATGGACACGTTTTTGTAAAT
GAGAAAGGCACTCAGTTCAAAACTATTGTTGAGTATGCTCCTTCACAGCGTGCTCCAAAA
CGCTGGTCCAAGAAGGATGGCCGCGAAGGAACCATCTTGAAAGATCCTGAATATCTGGAG
TTCCTTGAATTTATTGCAAAGCCTATCGAGAATCTTCCGAGTGCAGAAATACAATTGGAA
AGAAAGGAAGCTGAACGAGCTGGTTCTGCAAAGGATGCTCCTATAGTTACTCCTTTGATG
GACTACATACGTCAGAAAAGAGCTGCCAAGAGTGGAGCTCGGAAATCTCTATCTAATGGG
AGACCGACCAGAAGAGCGAACGGCACATCCTCAGGAAGTCCTAGCTCAAGTGCATTTAAA
CAAGGCTCTGAAAAGAGAAGGGTTTCTACAACCATGTATGTTCTTCGAGATAGTTCTAAG
GCTGGGAGTGGCAAAGACAAAAGACATATTTTAGTTCCAAAACGTGACGATCAGCAGCAG
GCTGAGAAGTCTGGTACCTCCGCTCCTGGATCTGGGGCTGATGCAGTTGAAGAGGAAACT
GGTGGAGCTGCTGATGTTGGGAAGAAGAAAATCCTGCTCTTGAAGGGAAAGGAAAGAGAA
ATTCCTAATGTTTCTAGTGGTTCATTGATTCAGGACAATGCGGCACCTATTGTCAAGAAT
ACAATAACATCATCTGCTCCGCAACAGAACCAGCGCCGTGAGGCAAGTGGGAAGATCATT
AGAAGTATTCTTCTCAAGGATGCTCGTCAAAATCAAGCTCCTTCTGCATCCCAACAAGAA
CAGCACAGCCAGGATAAGGACAAAAAGCCTCCTAGGCCACCAAGCGTGCAGTTGTTTCAG
AAAGAAATTAACGGAGTTAATGAGGATAAGATTGTTGGAACTGATTTGCATGTTGTCCAC
ACTGAAAAGCAGGAAAGACGCTCTAGGATTAGGGATAGGCCTGATCGTGGTGTTTGGACT
CCTCTTCGTCGTGCTGATAGTTTGCATGCTAGTGATGAATCCTTGTCTTCATCTACCTCT
CAATCTTCTGAAGTGCTGGATTCTCTTGAAGGAAGTCAGGGTGAAACCAAAAATGATCTG
CCAAATGTTCGTGGTGGGGAGTTCAGACCCATGGGAAGCGGGCGTAATTCTCATTCTTCT
TTTGACAATGGTACTTATAAACGTCGTGGTATGAGGGATGATGGCATTTCAGTAGGGGAA
GGAAAACCCTTGAGAAGGGGAGGTCCTTCTAACTATGGTACCCATGAGAAACAAGTGTGG
GTCCAAAAGTCAAGTTCTGGTACTTAA

Peptide Sequence

PEP ID

XP_016498342.1
PEP Infomation

PREDICTED: regulator of nonsense transcripts UPF3-like [Nicotiana tabacum]
Sequence

MKGPLDRTKVVLRHLPPTISQSMLVEQVLSRFTGRYNWFSFRPGKSSQKHQTYSRAYVDF
KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRAPKRWSKKDGREGTILKDPEYLE
FLEFIAKPIENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGARKSLSNG
RPTRRANGTSSGSPSSSAFKQGSEKRRVSTTMYVLRDSSKAGSGKDKRHILVPKRDDQQQ
AEKSGTSAPGSGADAVEEETGGAADVGKKKILLLKGKEREIPNVSSGSLIQDNAAPIVKN
TITSSAPQQNQRREASGKIIRSILLKDARQNQAPSASQQEQHSQDKDKKPPRPPSVQLFQ
KEINGVNEDKIVGTDLHVVHTEKQERRSRIRDRPDRGVWTPLRRADSLHASDESLSSSTS
QSSEVLDSLEGSQGETKNDLPNVRGGEFRPMGSGRNSHSSFDNGTYKRRGMRDDGISVGE
GKPLRRGGPSNYGTHEKQVWVQKSSSGT

Transcript Sequence

Gene sequence data has not been registered.